BtaEX0031467 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34219003-34221313:+
Coord C1 exon
chr21:34219003-34219101
Coord A exon
chr21:34219635-34219763
Coord C2 exon
chr21:34221196-34221313
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTGGAGCTGTGTGTTGCAGCTC
3' ss Score
3.61
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ACAAATGCAGCGACGACGGTTCCTGTCTCACAGATGCCCGGGGCCTCGCAGCCGGCAGTTCTCCAACCCTCAGTGGAGCCCACCCAGCCAACCCCCCAG
Seq A exon
CTCCTGCTTAGACAGGCCAGCAGGTTCCTGCCCACCAGATTCCTGGCAGTGAGTGAGCTCTCAGAGAGGCAGATGCTGCTAGGAGGAGATAGTATTCTCAGAGACAGCTACCTGCGAAACCTGCCAAAG
Seq C2 exon
GCTGTGGCCTCTGCAGCCCAGGCAAGCCTGCTCCGGCAGCAGGAAGAACTGGACAGGAAAGCGGCCGAGCTGGAACGGAAGGAGCGGGAGCTTCAGAACACGGTGGCCAACTTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.070 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000007681fB6150
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGCAGCGACGACGG
R:
TGTAAGTTGGCCACCGTGTTC
Band lengths:
215-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development