MmuEX0041134 @ mm10
Exon Skipping
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57577639-57579550:+
Coord C1 exon
chr9:57577639-57577737
Coord A exon
chr9:57578274-57578402
Coord C2 exon
chr9:57579433-57579550
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTGGAGTTGTGTATTGCAGCTC
3' ss Score
3.96
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ACAAATGCAGCGACAACAGTTCCTGCCACACAAGCTCCTGGGCCCTCCCAGCCAGCAGTTCTCCAGCCCTCAGTGGAACCAGCACAGCCAACGCCCCAG
Seq A exon
CTCCCGGTTAGACAGGCCAGCAAGTTTCTGCCTGCCCGATTCCTGGCAGCGGGTGAGCCCTCAGAGAGGCAGACGCTACTAGGAGGAGATAGTATTTCCAGGGACAGCCACAAGCGCAAGCCTTCGAAG
Seq C2 exon
GCTGTTGCAGCTGCGGCCCAGGCAGGCTTGCTTCGACAGCAGGAAGAACTAGACAGGAAAGCTGCCGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCAGCGAATTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.767 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGCGACAACAGTTCCT
R:
TGCAAATTCGCTGCAGTGTTC
Band lengths:
212-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types