HsaEX0056357 @ hg38
Exon Skipping
Gene
ENSG00000140497 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr15:74852069-74854119:-
Coord C1 exon
chr15:74854021-74854119
Coord A exon
chr15:74853368-74853496
Coord C2 exon
chr15:74852069-74852186
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGTGGAGTTGTGTGTTGCAGCTC
3' ss Score
3.88
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACAAATGCAGCGACAACAGTTCCTGTCACCCAACTCCCTGGGTCCTCACAGCCAGCGGTTCTCCAGCCATCAGTGGAACCAACCCAGCCGACCCCCCAG
Seq A exon
CTCCTGCTTAGACAGGCCAGCAAGTTCCCGCCTGCCCAATTCCTGGCAGTGAGCGAGCTCTCAGAGAGGCAGATGCTCCTAGGAGGAGAAAGTATTCTCAGAGACAGCTACATGCGAAAGCTTCCGAAG
Seq C2 exon
GCCGTGGTGTCTGCAGCCCAGGCAGGCCTGCTCCGGCAGCAGGAAGAACTGGACAGGAAAGCTGCCGAGCTGGAACGCAAGGAGCGGGAGCTGCAGAACACTGTAGCCAACTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140497_MULTIEX1-3/8=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=0.093 C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGCGACAACAGTTCCT
R:
TGCAAGTTGGCTACAGTGTTCT
Band lengths:
212-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development