RnoEX0078301 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62356826-62358762:+
Coord C1 exon
chr8:62356826-62356924
Coord A exon
chr8:62357443-62357571
Coord C2 exon
chr8:62358645-62358762
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTGGAGTTGTGTATTGCAGCTC
3' ss Score
3.96
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACAAATGCAGCGACAACAGTTCCTGTCACACAACTTCCTGGGCCCTCCCAGCCAGCAGTTCTCCAGCCCTCAGTGGAGCCAGCACAGCCATCGCCCCAG
Seq A exon
CTCCTGCTTAGACAGGCCAGCAAGTTTCTGCCTGCCCGATTCCTGGCAGCGGGTGAGCCCTCAGAGAGGCAGATGCTACTAGGAGGAGATAGTAGTCCCAGGGACAGCTACATGTGCAAGCTTCCGAAG
Seq C2 exon
GCTGTTGCGGCTGCAGCCCAGGCAGGCCTGCTTCGGCAGCAGGAAGAGTTAGACAGGAAAGCTGCTGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCGGCGAATTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=0.326 C2=0.383
Domain overlap (PFAM):
C1:
PF120723=DUF3552=PU(0.1=0.0)
A:
NO
C2:
PF120723=DUF3552=FE(84.8=100)
Main Inclusion Isoform:
ENSRNOT00000066923fB12935
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGCGACAACAGTTCCT
R:
CAAATTCGCCGCAGTGTTCTG
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]