BtaEX0031622 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22422605-22426900:-
Coord C1 exon
chr2:22426719-22426900
Coord A exon
chr2:22425767-22425966
Coord C2 exon
chr2:22422605-22422817
Length
200 bp
Sequences
Splice sites
3' ss Seq
CTTTAATATTTTTATTTTAGACT
3' ss Score
7.4
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGTACTTACATAGAAATTGATCAAGTTCCTGAAACATACGCCGTTGTCCTTAGTCGCCCAGCTTGGTTATGGGGAGCAGAAATGGGAGCCAATGAGCATGGAGTTTGCATTGGGAATGAAGCTGTATGGGGAAGAGAAAAAGTTTGTGATGAAGAGGCACTACTGGGCATGGACCTTGTCAG
Seq A exon
ACTTGGCCTTGAAAGAGGTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGATTTATTAGAAAAATATGGCCAGGGTGGAAATTGTTCAGAGGGCAGGATGGTATTTAGCTATCACAACAGTTTCCTGATAGCAGATAGAAATGAAGCCTGGATTCTGGAGACTGCAGGAAAGTACTGGGCAGCAGAAAAAGTAGAAG
Seq C2 exon
AGGGAGTTCGCAATATTTCTAATCAGCTTTCTATAACGACCAAAATTGATCGGGAACACCCAGACATGAGAAACTATGCCAAGCAGAGAGGTTGGTGGGATGGGAAAAAGGAATTCGATTTTGCTGCAACATACTCTTATCTTGACACAGCCAAGATGATGATTTCACCAGGCAGATACTGTGAAGGCTACAAACTTCTGAATAAGCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(26.6=93.4)
A:
PF0357710=Peptidase_C69=FE(25.2=100)
C2:
PF0357710=Peptidase_C69=FE(26.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGAAATGGGAGCCAAT
R:
GCCTTCACAGTATCTGCCTGG
Band lengths:
298-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development