DreEX6034749 @ danRer10
Exon Skipping
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2517015-2519247:-
Coord C1 exon
chr9:2519066-2519247
Coord A exon
chr9:2518463-2518662
Coord C2 exon
chr9:2517015-2517227
Length
200 bp
Sequences
Splice sites
3' ss Seq
TGCTCTGCTTGTGTGTTCAGGCT
3' ss Score
8.38
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
TGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCG
Seq A exon
GCTGGCTCTGGAGCGGGCCGACACGGCGGAGAAAGCTGTGGACGTCATCACAGATCTGCTGGAGAAATACGGCCAGGGAGGAAACTGCATGGAGGACGAGTGTGGATTCACGTACCACAACAGCTTCCTCATATCAGACCGCAAAGAAGCCTGGGTGCTGGAGACTGCTGGGAAACACTGGGCTGCGGAGAGAGTGGAGG
Seq C2 exon
CCGGCTACAGGAACATCTCCAATCAGTACTCCATTACTACTAAGATTGACAAGGAGCACCCGGGGATGAGGACGTACGCGAAAGAGCAGGGCTGGTGGGACGGAGAGAGCGAGTTCAGCTTTACTGATGTTTACTCGTACTCCAGCACCGCCCGCATCCAGGCGGCAGGCGGAAGATACTGTGAGGGACAGAAACTGCTGCAAAAGAGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(26.3=98.4)
A:
PF0357710=Peptidase_C69=FE(29.4=100)
C2:
PF0357710=Peptidase_C69=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGGCAAATGAGCATCA
R:
TTGCAGCAGTTTCTGTCCCTC
Band lengths:
305-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]