MmuEX6102183 @ mm10
Exon Skipping
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73315432-73329925:+
Coord C1 exon
chr2:73315432-73315592
Coord A exon
chr2:73319303-73319499
Coord C2 exon
chr2:73329763-73329925
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTTGAGTATTTTTATTTTAGGCT
3' ss Score
5.74
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
AAATGGAACCCTATTCCTGTGACACTTTTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAG
Seq A exon
GCTGGGCCTTGAGAGAGCTGACACGGCTGAGAAAGCTCTGGATGTCATTGTTGACTTACTAGAAAAGTATGGCCAAGGTGGAAACTGCGCAGAGGGCAAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAG
Seq C2 exon
GAAACATAACTTTTGAAACGATGATGGAAATTCTTCGAGACAGACCCAGTGGCATCAACATGAAGGGAGAATTCCTGACCACGGCAAGCATGGTTTCTGTTTTACCTCAGGATCCCAGCCTTCCTTGCATTCACCTCTTTACTGCAACTCCGCACCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PU(12.8=60.4)
A:
PF0357710=Peptidase_C69=FE(26.4=100)
C2:
PF0357710=Peptidase_C69=PD(8.0=36.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCATTACCTCCAGCAACA
R:
AAGGAAGGCTGGGATCCTGAG
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types