RnoEX0078706 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60028717-60032771:+
Coord C1 exon
chr3:60028717-60028898
Coord A exon
chr3:60029646-60029842
Coord C2 exon
chr3:60032562-60032771
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTTCAATATTTTTATTTTAGGCT
3' ss Score
7.83
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TGTACTTATATAGAAGTCGATCAGGTTCCTGAAACATATGCTGTTGTTCTTAGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTATCTGGGGAAGAGAAGATATTTCTAAGGAGGAGGCACTTCTGGGCATGGACCTTGTCAG
Seq A exon
GCTCGGCCTTGAAAGAGCTGATACAGCTGAAAAAGCTCTCAACGTCATTGTTGACTTATTAGGAAAATATGGCCAAGGTGGAAACTGTGCAGAGGGTGAAGAATTCAGCTATTATAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATTCTGGAGACTTCAGGGAAGTTCTGGGCAGCAGAGAAAGTCCAAG
Seq C2 exon
GAGTTCGTAATATTTCCAATCAGTTTTCCATAACAACCAAGATTGACCGGGAGCATCCAGACATGAGGAACTATGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAGGAGTTCGATTTTGCTGCAGCGTATTCTTACACTGACACGGCCACAATGATGACTTCACCAAGCAGATACTGCCAGGGCCACAAGCTTCTGAATAAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657_MULTIEX1-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.2=100)
A:
PF0357710=Peptidase_C69=FE(26.6=100)
C2:
PF0357710=Peptidase_C69=FE(28.2=100)
Main Skipping Isoform:
ENSRNOT00000081881fB13013
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGAGTCTGCATTGGGAA
R:
AGTCATCATTGTGGCCGTGTC
Band lengths:
248-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]