BtaEX0031860 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046924 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr22:49002966-49003589:+
Coord C1 exon
chr22:49002966-49003111
Coord A exon
chr22:49003313-49003427
Coord C2 exon
chr22:49003520-49003589
Length
115 bp
Sequences
Splice sites
3' ss Seq
GACCGGCCCCCACCCCCCAGAAT
3' ss Score
7.59
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACCCCAGGTTTGTGCTGGCCGCCCGGATCCCTGACAATTCTGACCCGGACGACGACAAGGTGTACTTCTTCTTCTCGGAGACAGTCCCCTCGCCTGACGGAGGCCCGGGCCGTGTCACCATCAGCCGAGTGGGCCGCGTCTGTGTG
Seq A exon
AATGATGCGGGCGGCCAGCGGGTGCTGGTGAACAAATGGAGCACCTTCCTCAAGGCCAGGCTGCTCTGCTCCGTGCCTGGCCCTGGCAGTGCCGAGACCCACTTCGACCAGCTGG
Seq C2 exon
AGGACGTGTTCCTGCTGTGGCCCAACTCGGGGAAGAGCCTGGAGGTGTACGCTCTGTTCAGCACGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046924-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(8.5=100)
C2:
PF0140314=Sema=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGTTTGTGCTGGC
R:
CGTGCTGAACAGAGCGTACAC
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development