GgaEX1051637 @ galGal3
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2948582-2949200:-
Coord C1 exon
chr12:2949058-2949200
Coord A exon
chr12:2948741-2948855
Coord C2 exon
chr12:2948582-2948651
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGCACTCCCCATCCCTACAGAAT
3' ss Score
8.28
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACCCCAAATTCGTGGCTGCTTACATGATCCCAGACAACGATGATCGAGACGATGACAAAGCCTATTTCTTCTTCACGGAGAAGGTGGTGGAGGCAGACAGCAAGGAGCACACCATCGTCAGCCGGGTGGCACGGGTCTGCGTG
Seq A exon
AATGATGCTGGAGGCCAGAGGGTGCTGGTCAACAAGTGGAGCACCTTCAACAAAGCCCGCCTGGTGTGCTCTGTCCCGGGTCCTGGCGGCATTGATACCCATTTTGATGAGCTGG
Seq C2 exon
AGGATGTCTTTTTGCTGAGGACCAAGGATGGGAAGAACCCAGAGATCTATGCACTCTTCAGCACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.0=100)
A:
PF0140314=Sema=FE(9.7=100)
C2:
PF0140314=Sema=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAATTCGTGGCTGCTTA
R:
CTGACTGTGCTGAAGAGTGCA
Band lengths:
212-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]