DreEX6050291 @ danRer10
Exon Skipping
Gene
ENSDARG00000007560 | sema3bl
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl [Source:ZFIN;Acc:ZDB-GENE-030131-2956]
Coordinates
chr8:26541923-26545572:+
Coord C1 exon
chr8:26541923-26542071
Coord A exon
chr8:26545268-26545382
Coord C2 exon
chr8:26545503-26545572
Length
115 bp
Sequences
Splice sites
3' ss Seq
TACTGTTTTTGTGCTTTCAGAAT
3' ss Score
9.11
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
AGCCCAGATTTGTTGCGGCGCACCTTATTCCTGACAGTGCAGACAGGGATGATGATAAAATTTATTTCTTCTTCACTGAGAGAGCAACAGAAACCGCAGAGCGAGACGATGATGGAGCCATACACACACGCATCGGGCGATTGTGTGCG
Seq A exon
AATGATGTGGGCGGACAGAGGGTTTTGGTGAATAAGTGGAGCACATTTATTAAAGCCCGACTGGTGTGTTCAGTTCCTGGACCTCACGGCATCCAAACACACTTTCATCAGCTAG
Seq C2 exon
AGGATGTGTTTCTATTAAGAACAAAAGATGAAACCAATCCAGAGATCTACGCAATATTCAGCACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007560-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.4=100)
A:
PF0140314=Sema=FE(8.1=100)
C2:
PF0140314=Sema=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGATTTGTTGCGGC
R:
CTGATTGTGCTGAATATTGCGT
Band lengths:
219-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]