RnoEX0079296 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7307661-7308299:+
Coord C1 exon
chr16:7307661-7307806
Coord A exon
chr16:7308003-7308117
Coord C2 exon
chr16:7308230-7308299
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACTCCACCCTCCATCCCCAGAAT
3' ss Score
9.43
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATCCCCGGTTTGTGATGGCTGCTCGGATCCCAGATAACTCCGACCGGGATGATGACAAAGTGTACTTCTTCTTCTCTGAGACTGTCCCTTCACCAGATGGTGGCCCAGGTCATGTCACCGTCAGCCGCGTGGGTCGAGTCTGTGTG
Seq A exon
AATGATGCTGGTGGCCAGCGGGTGCTGGTGAATAAATGGAGCACGTTCCTCAAGGCCAGGCTGGTATGCTCTGTGCCTGGCCCTGGCGGGGCTGAGACTCACTTTGACCAGCTGG
Seq C2 exon
AGGATGTGTTCCTGCTGTGGCCAAAGGCAGGGAAGAACCTCGAGGTGTATGCGCTGTTCAGCACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'11-10,'11-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(8.5=100)
C2:
PF0140314=Sema=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCGGTTTGTGATGGCT
R:
GAACAGCGCATACACCTCGAG
Band lengths:
205-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]