BtaEX0031865 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012228 | SEMA4A
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [Source:HGNC Symbol;Acc:HGNC:10729]
Coordinates
chr3:14660948-14671896:-
Coord C1 exon
chr3:14671746-14671896
Coord A exon
chr3:14663115-14663272
Coord C2 exon
chr3:14660948-14661048
Length
158 bp
Sequences
Splice sites
3' ss Seq
AGGCTTCATCTCTTTTCCAGGGA
3' ss Score
8.35
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCACGTTGGTGGGACCAGGAGCTCTGCTGTCTGTGCTTTCTCACTCAAGGACATCAAGAGTGTCTTTGAGGGGAAGTATAAGGAATTGGACAAAGAGACTTCACGCTGGACTACTTATGAATATCCTGATATCAGTCCACGGCCAGGCAGT
Seq A exon
GGAGCAGTGTTTGTAGGCTTCTCAGGAGGCATCTGGAAGGTTCCTCGAGCCAACTGTAGTGTCTACGAGAGCTGTATGGACTGTGTCCTTGCCCGGGACCCTCACTGTGCCTGGGACCCTGAGTCTCAAACCTGCCGCCTCCTGCCCACCCCCATCCT
Seq C2 exon
GAAGTCCTGGAAACAGGACATGCAGCAAGGGAACCCAGAGTGGGCATGTGCCAGTGGCCCCATGGGCAGGAGTCTGGGGCCCAGGAGCCGCCCCCAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012228_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.0=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=48.6)
Main Skipping Isoform:
ENSBTAT00000016223fB6229
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACCAGGAGCTCTG
R:
GATTTGGGGGCGGCTCCT
Band lengths:
244-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development