RnoEX0079306 @ rn6
Exon Skipping
Gene
ENSRNOG00000019737 | Sema4a
Description
semaphorin 4A [Source:RGD Symbol;Acc:1304636]
Coordinates
chr2:187801367-187802089:-
Coord C1 exon
chr2:187801971-187802089
Coord A exon
chr2:187801712-187801869
Coord C2 exon
chr2:187801367-187801464
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCATCTCTTTCCCAGGGT
3' ss Score
9.74
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTACGGGGTCCCTGCACAAAGCTGTGGTGCCTCAGAATAGCAGTGCTTATCTTGTGGAGGAGATTCAGCTGAGCCCTAACTCTGAGCCTGTTCAGAACCTGCAGCTGGCCCCCACCCAG
Seq A exon
GGTGCAGTGTTCGCAGGCTTCTCTGAAGGCATCTGGAGGGTTCCCAGGGCCAACTGCAGTGTCTATAAGAGCTGTGTGGACTGTGTCCTTGCCAGGGACCCTCACTGTGCCTGGGACCCTGAATCAAGACTGTGCAGCCTTCTGTCTGGCTCTCCCCT
Seq C2 exon
GACTTGGAAGCAGGACATGGAACGCGGCAACCCGGAGTGGGCATGCGCCCGTGGCCCCATGGCCAGGAGCCCCCGGCGTCAGAGCTCCCCTCAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019737-'26-31,'26-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.456
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.4=100)
A:
PF0143720=PSI=PU(62.5=66.0)
C2:
PF0143720=PSI=PD(35.7=58.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGGGTCCCTGCACAAAG
R:
TGAGTTGAGGGGAGCTCTGAC
Band lengths:
217-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]