BtaEX0031898 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20796917-20797824:+
Coord C1 exon
chr7:20796917-20797066
Coord A exon
chr7:20797407-20797589
Coord C2 exon
chr7:20797678-20797824
Length
183 bp
Sequences
Splice sites
3' ss Seq
TGCTCCACCCTGGCCCCAAGGCA
3' ss Score
3
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCCGGGTGCTGCGCAGCTCCTGGCATGCAGTACAATGCCTCGAGCGCCTTCCCAGACGAGATCCTCAACTTTGTCAAGACACACCCCCTGATGGACGAGGCCGTGCCCTCCCTGGGCCACGCACCCTGGATCGTTCGGACTCTGATGCG
Seq A exon
GCACCAGCTGACACGAGTGGCTGTGGACGTGGGCGCCGGCCCCTGGGGCAACCAGACTGTTATCTTCCTCGGGTCTGAGGCAGGCACGGTCCTCAAGTTCCTTGTCTGGCCCAACGCCAGTGCCTCGGGTACCACGGGACCCAGTGTCTTCCTGGAGGAATTTGAGACCTACCGGCCTGACAG
Seq C2 exon
GTGTGGACGGTCTGGAGATGGCGAGACAGGGCAGCGGCTGCTGAGCCTGGAGCTGGATGCGGCCTCAGGCGGCCTGCTGGCAGCCTTCCCCCGCTGTGTGGTCCGAGTGCCCGTGGCGCGCTGCCAGCAATACTCAGGATGCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'12-17,'12-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.016 C2=0.100
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.8=100)
A:
PF0140314=Sema=FE(14.5=100)
C2:
PF0140314=Sema=PD(0.2=2.0),PF0143720=PSI=PU(16.1=18.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGACGAGATCCTCA
R:
GCATCCTGAGTATTGCTGGCA
Band lengths:
245-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development