DreEX6029186 @ danRer10
Exon Skipping
Gene
ENSDARG00000036626 | sema6ba
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba [Source:ZFIN;Acc:ZDB-GENE-131024-1]
Coordinates
chr2:49573458-49585637:+
Coord C1 exon
chr2:49573458-49573607
Coord A exon
chr2:49578983-49579162
Coord C2 exon
chr2:49585497-49585637
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGCTCATTTTGAAGGTA
3' ss Score
8.02
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GCCTGGAGGATGTGCTGTCCAGGGCTCCAGATTCAGCACCTCCAACACCCTCCCTGACGAAGTGCTTAATTTCATCAAAATCCATCCTCTGATGGACGAAGCGGTTCCTTTGTTAGGACACAGACCCTGGATAGTCAAGACCATGGTCCG
Seq A exon
GTACCAGTTGAACACTATGGTGGTGGACACCGAGGCAGGCCCTCATCGCAATCGTACTGTGGTTTTCCTCGGTTCTACTAGGGGAACCGTCCTTAAGTTCCTCATCACACCCAGCCCGGAGAACCAATACTCCAATACCAATACATTCCTGGAAGAGCTGGAGGGATACAACCCTGAAAG
Seq C2 exon
ATGTGGTGATGACTCTGCGCAGGCGATGCAGCCGCTCTCTCTGACCTTGGACAAACCCAGTCACACGCTCCTGCTGGCCTTCCACTCGTGTGTGGTGCGAGTGCCTGTCGCTCGCTGCCACCTGCACTCCAGATGCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036626-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.115 C2=0.042
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.7=100)
A:
PF0140314=Sema=FE(14.1=100)
C2:
PF0140314=Sema=PD(1.9=16.7),PF0143720=PSI=PU(17.6=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCACCTCCAACACCCTC
R:
CATGCATCTGGAGTGCAGGTG
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]