HsaEX6092051 @ hg38
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
semaphorin 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr19:4548027-4550272:-
Coord C1 exon
chr19:4550123-4550272
Coord A exon
chr19:4548263-4548445
Coord C2 exon
chr19:4548027-4548173
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGCCCTGTCCCCCAGGCA
3' ss Score
11.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCCGGGTGCTGCGCAGCCCCCGGGATGCAGTACAATGCCTCCAGCGCCTTGCCGGATGACATCCTCAACTTTGTCAAGACCCACCCTCTGATGGACGAGGCGGTGCCCTCGCTGGGCCATGCGCCCTGGATCCTGCGGACCCTGATGAG
Seq A exon
GCACCAGCTGACTCGAGTGGCTGTGGACGTGGGAGCCGGCCCCTGGGGCAACCAGACCGTTGTCTTCCTGGGTTCTGAGGCGGGGACGGTCCTCAAGTTCCTCGTCCGGCCCAATGCCAGCACCTCAGGGACGTCTGGGCTCAGTGTCTTCCTGGAGGAGTTTGAGACCTACCGGCCGGACAG
Seq C2 exon
GTGTGGACGGCCCGGCGGTGGCGAGACAGGGCAGCGGCTGCTGAGCTTGGAGCTGGACGCAGCTTCGGGGGGCCTGCTGGCTGCCTTCCCCCGCTGCGTGGTCCGAGTGCCTGTGGCTCGCTGCCAGCAGTACTCGGGGTGTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680-'18-29,'18-28,19-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.016 C2=0.120
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.9=100)
A:
PF0140314=Sema=FE(14.5=100)
C2:
PF0140314=Sema=PD(0.1=0.0),PF0143720=PSI=PU(16.1=18.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCCGGATGACATCC
R:
ATACACCCCGAGTACTGCTGG
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains