BtaEX0032201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018555 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr11:11442832-11471885:+
Coord C1 exon
chr11:11442832-11442922
Coord A exon
chr11:11462290-11462405
Coord C2 exon
chr11:11471768-11471885
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTTCTCTCTCTCCAGCCA
3' ss Score
10.02
5' ss Seq
CATGTGGGT
5' ss Score
2.93
Exon sequences
Seq C1 exon
GTGGGCCTTAATGTCCTGGTTCAGAAAGCCAACAAGTTCACCCCGGCCACCCGCCTTCTCGTCCAGAGATTTGTGCCATTCCCTGCCGTAG
Seq A exon
CCAGCGCCAATATCTGCAACGTGGTTCTGATGCGATACGGGGAGCTGGAGGAGGGAATTGACGTCTTGGACGGTGATGGCAACCTCGTGGGCTCCTCCAAGATCGCCGCCAGACAT
Seq C2 exon
GACAGCTCTCCTGCAGGCGCGTCCCCGGCTGCTCCTCCCTGTGCAAAGCCTTGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCACTGGCCATCAGCCTCTTCCCTCAGATGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018555_MULTIEX2-7/8=6-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(13.6=100)
A:
PF0382012=Mtc=FE(17.3=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCTTAATGTCCTGGTT
R:
ACATCTGAGGGAAGAGGCTGA
Band lengths:
204-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development