RnoEX0080182 @ rn6
Exon Skipping
Gene
ENSRNOG00000037871 | Sfxn5
Description
sideroflexin 5 [Source:RGD Symbol;Acc:628706]
Coordinates
chr4:117014633-117036433:-
Coord C1 exon
chr4:117036343-117036433
Coord A exon
chr4:117016693-117016808
Coord C2 exon
chr4:117014633-117014718
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGTATTCCTCTCTCTCCAGCCA
3' ss Score
8.95
5' ss Seq
CACGTGGGT
5' ss Score
4.46
Exon sequences
Seq C1 exon
GTGGGCCTTAATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCCACTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAG
Seq A exon
CCAGTGCCAATATCTGCAACGTGGTCCTGATGCGGTATGGGGAGCTAGAGGAAGGGATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATCGCAGCCAGACAC
Seq C2 exon
GCCCTGCTGGAGACAGCTCTGACACGAGTGGTTCTGCCTATGCCCATCCTGGTGCTCCCCCCGATCGTCATGTCCATGCTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037871-'27-31,'27-29,35-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.7=100)
A:
PF0382012=Mtc=FE(12.3=100)
C2:
PF0382012=Mtc=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTTAATGTGCTGGTTCA
R:
TCTCCAGCATGGACATGACGA
Band lengths:
174-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]