GgaEX6036314 @ galGal4
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr4:89336248-89341325:+
Coord C1 exon
chr4:89336248-89336338
Coord A exon
chr4:89339051-89339166
Coord C2 exon
chr4:89341240-89341325
Length
116 bp
Sequences
Splice sites
3' ss Seq
CGTGCTTTTCTCATCCTCAGCCA
3' ss Score
8.49
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTGGGCCTTAATGTTCTGGTACAGAGAGCGAACAAGTTTACCCCCGCCACTCGTCTCTTGATCCAGAGGTTTGTGCCATTCCCTGCTGTTG
Seq A exon
CCAGTGCCAATATCTGCAACGTTGTCCTGATGAGGCACACGGAGCTGGAAGAAGGAATTGATGTTTTGGACAATAATGGAAACATCGTCGGCTCTTCCAGAATTGCTGCAAAACAT
Seq C2 exon
GCACTGCTAGAAACAGCCCTGACTAGAGTGGTCCTGCCGATGCCTATACTGGTTCTACCTCCAATTATTATGTCCATACTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'21-28,'21-27,22-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.7=100)
A:
PF0382012=Mtc=FE(12.3=100)
C2:
PF0382012=Mtc=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCTTAATGTTCTGGTACA
R:
CCAGTATGGACATAATAATTGGAGGT
Band lengths:
173-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]