GgaEX6036314 @ galGal3
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
NA
Coordinates
chr4:93371386-93376463:+
Coord C1 exon
chr4:93371386-93371476
Coord A exon
chr4:93374189-93374304
Coord C2 exon
chr4:93376378-93376463
Length
116 bp
Sequences
Splice sites
3' ss Seq
CGTGCTTTTCTCATCCTCAGCCA
3' ss Score
8.49
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTGGGCCTTAATGTTCTGGTACAGAGAGCGAACAAGTTTACCCCCGCCACTCGTCTCTTGATCCAGAGGTTTGTGCCATTCCCTGCTGTTG
Seq A exon
CCAGTGCCAATATCTGCAACGTTGTCCTGATGAGGCACACGGAGCTGGAAGAAGGAATTGATGTTTTGGACAATAATGGAAACATCGTCGGCTCTTCCAGAATTGCTGCAAAACAT
Seq C2 exon
GCACTGCTAGAAACAGCCCTGACTAGAGTGGTCCTGCCGATGCCTATACTGGTTCTACCTCCAATTATTATGTCCATACTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'16-27,'16-26,17-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.7=100)
A:
PF0382012=Mtc=FE(12.3=100)
C2:
PF0382012=Mtc=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCTTAATGTTCTGGTACA
R:
CCAGTATGGACATAATAATTGGAGGT
Band lengths:
173-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]