BtaEX0033000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015436 | SLC27A4
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 4 (SLC27A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075667]
Coordinates
chr11:98967746-98971732:+
Coord C1 exon
chr11:98967746-98967910
Coord A exon
chr11:98968008-98968154
Coord C2 exon
chr11:98970918-98971732
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGCCGCTTCCCCAGGGA
3' ss Score
7.69
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGATGTGCTAGTGATGGACGAGCTGGGCTACGTGTATTTCCGCGACCGCACGGGGGACACGTTCCGCTGGAAAGGCGAGAACGTGTCCACCACCGAGGTGGAGGGCACGCTCAGCCGCCTGCTGGACATGGCCGACGTGGCCGTGTACGGCGTCGAGGTGCCAG
Seq A exon
GGACCGAGGGCCGGGCCGGCATGGCCGCTGTGGCCAGCTCCTCCGGCAGCTGTGACCTGGAGCACTTAGCCCAGCTCCTGCAGAAGGAGCTGCCGCTGTACGCTCGCCCCATCTTCCTGCGCTTCCTGCCTGAGCTGCACAAGACAG
Seq C2 exon
GGACATTCAAGCTACAGAAGACAGAACTGCAGAAGGAGGGCTTTGACCCAACAGTTGTAAAAGACCAGCTGTTCTACCTGGATGCCCGGAAGGGCCGCTACGTCCCACTGGACCAAGAGGCCTACACTCGCATCCAGGCGGGCCAGGAGAAGCTGTGACTGGCCCCAAGTCCCTCTGAGGGCCAGTGGATACTGGATCTAGAGCCCCAGCTCCCACCCCGGAGGGGTCCTGGGCAAAGCCAGACCAAAGCAAGCAGAGTCTGGCACCACCCACCCCGAGGTGCCAACCCCCACCCCTCAAAACTGCCAGGGGACTCACTGCCACCTCCCTGCTCTGCCCTGAGGCTTTCTGTGAAAGCTTCAGATCCACTTTATGTCTTCGAGGCCAAGTAGGGGTCTCTGGGCCTCAGGCTGAGACTGAGACTGGGCCCAAGGGGTGATGTCTCAGGTCAGGACAAGGGGAAATAAGAGGGTCTCCAAGCACTTTGCAGAGAACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015436-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGTTCCGCTGGAAAGG
R:
GATGCGAGTGTAGGCCTCTTG
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development