HsaEX0059220 @ hg38
Exon Skipping
Gene
ENSG00000167114 | SLC27A4
Description
solute carrier family 27 member 4 [Source:HGNC Symbol;Acc:HGNC:10998]
Coordinates
chr9:128355398-128361217:+
Coord C1 exon
chr9:128355398-128355562
Coord A exon
chr9:128355650-128355796
Coord C2 exon
chr9:128360334-128361217
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTCTACCCTGCCACCCCCAGGAA
3' ss Score
8.15
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGATGTGCTGGTGATGGACGAGCTGGGCTACCTGTACTTCCGAGACCGCACTGGGGACACGTTCCGCTGGAAAGGTGAGAACGTGTCCACCACCGAGGTGGAAGGCACACTCAGCCGCCTGCTGGACATGGCTGACGTGGCCGTGTATGGTGTCGAGGTGCCAG
Seq A exon
GAACCGAGGGCCGGGCCGGAATGGCTGCTGTGGCCAGCCCCACTGGCAACTGTGACCTGGAGCGCTTTGCTCAGGTCTTGGAGAAGGAACTGCCCCTGTATGCGCGCCCCATCTTCCTGCGCCTCCTGCCTGAGCTGCACAAAACAG
Seq C2 exon
GAACCTACAAGTTCCAGAAGACAGAGCTACGGAAGGAGGGCTTTGACCCGGCTATTGTGAAAGACCCGCTGTTCTATCTAGATGCCCAGAAGGGCCGCTACGTCCCGCTGGACCAAGAGGCCTACAGCCGCATCCAGGCAGGCGAGGAGAAGCTGTGATTCCCCCCATCCCTCTGAGGGCCGGCGGATGCTGGATCCGGAGCCCCAGGTTCCGCCCCAGAGCGGTCCTGGACAAGGCCAGACCAAAGCAAGCAGGGCCTGGCACCTCCATCCTGAGGTGCTGCCCCTCCATCCAAAACTGCCAAGTGACTCATTGCCTTCCCAACCCTTCCAGAGGCTTTCTGTGAAAGTCTCATGTCCAAGTTCCGTCTTCTGGGCTGGGCAGGCCCTCTGGTTCCCAGGCTGAGACTGACGGGTTTTCTCAGGATGATGTCTTGGGTGAGGGTAGGGAGAGGACAAGGGGTCACCGAGCCCTTCCCAGAGAGCAGGGAGCTTATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167114-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(53.3=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTGAGAACGTGTCCACC
R:
GAATCACAGCTTCTCCTCGCC
Band lengths:
255-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development