RnoEX0082089 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8373172-8376858:+
Coord C1 exon
chr3:8373172-8373336
Coord A exon
chr3:8373412-8373558
Coord C2 exon
chr3:8375898-8376858
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTGTACCCTCCCACTCCAGGAG
3' ss Score
8.99
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGACGTGCTGGTGATGGATGAGCTGGGCTACCTGTACTTCCGAGACCGCACAGGGGACACGTTCCGCTGGAAAGGGGAGAATGTGTCTACCACTGAAGTGGAGGGCACACTCAGCCGCCTGCTTCAGATGGCAGATGTGGCTGTTTATGGTGTTGAGGTGCCAG
Seq A exon
GAGCTGAGGGCCGAGCAGGAATGGCTGCTGTGGCAAGCCCCACTAGCAACTGTGACCTGGAGAGCTTTGCACAGACCTTGAAAAAGGAGCTGCCCCTGTACGCCCGCCCCATCTTCCTCCGCTTCTTGCCTGAGCTGCACAAAACAG
Seq C2 exon
GAACCTTCAAGTTCCAGAAGACAGAGTTGCGGAAGGAGGGCTTTGACCCGTCTGTTGTGAAAGACCCACTCTTCTATTTGGATGCCCGGACAGGCTGCTATGTTGCACTGGACCAAGAGGCCTATACCCGCATCCAGGCAGGCGAGGAGAAGCTGTGATTTCCCCCACATCCCTCTGAGGGCCAGAGGATGCTGGATTCAGAGCCCCAGCTTCCACCCCAGAGGGGTCCTGGGCAAGGCCAGACCAAAGCTAGCAGGGCCCGCACCTCCACCCCTAGGTGCTGATCCCCCTCTCCCAAACTGCCAAGTGACTGACTCACTGCCGCTTCCCCCACCCTCCAGAGGCTTTCTGTGAAAGTCTCATCCAAGCTGTGTCTTCTGGTCCAGGCGTGGCCCCTGGCTCCAGGCTTACTGACAGGCACCTTTAGGATGATGTCTTGGGTCCAGCGGGCCAGGATGTGGGAGAGGAGTCACTGAGATCCCTCCAAAAAGAAGGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'17-20,'17-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCTGGGCTACCTGTA
R:
AGTGCAACATAGCAGCCTGTC
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]