GgaEX1053192 @ galGal3
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
NA
Coordinates
chr17:5604372-5606102:-
Coord C1 exon
chr17:5605938-5606102
Coord A exon
chr17:5605342-5605488
Coord C2 exon
chr17:5604372-5604990
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTTCTGTCTCTCAGGCA
3' ss Score
11.33
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
GGGATGTCCTGGTGATGGACAAATACGGTTACATGTACTTTCGGGACCGCACTGGAGACACATTCCGCTGGAAGGGAGAGAACGTCTCCACTACTGAAGTGGAGGGGACGCTGAGCCGCATCCTCAACCTGACAGACGTGGTTGTGTATGGGGTGGAGATCCCAG
Seq A exon
GCATTGAGGGGAAGGCAGGAATGGCAGCCATTGCCGACCCAGAGAACTCATGTGACCTGGAGGGCTTTGCCAGCCAGCTGAAAAAGGCCCTGCCGCTGTATGCACAGCCTGTCTTCCTACGGTTCCTGCACGAGGTCTCCAAAACAA
Seq C2 exon
GCACCTACAAATTCCAGAAGATGGAGCTGCGTAAGCAGGGCTTTGACCCCACGCTGGTGAAGGACAAGTTGTACTTCTTGGACTGCAGGCAAGGCCGCTACCTGCCCCTGGACCAGGAGGCGTTCGACAGGATCCAGTCGGGACAGCAGAAGCTGTAACAGTGGGGCTCAAGCAAGGCAGCTCCCCGAATCATGCTGGGAGAAGAGGGGCAGGGCAGGCACTGGGGAAGGAAAGGTTCAAGGAGTGGTATAAAGGCACACTAGAGATTTTGTTCGACAAGTTTTACAGATCATGGGCTGGGGGAATGCAGCAGGGACTCGGGAGGGAGACGGTTACATACCAAAGCATAAACTCATTATGGCTTTATTTTCTACTTGGTACAGCGGTGACGGTCCCATGCCACAGGACGGGCAGGGCCCTGGCCAGTTGGGGAGGGGTGGAGTGCCCCTGCCATTCCATTTTGCTTTTCCTGTCTTTCCCTCCCTTTTCCTGCCCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTGAAGTGGAGGGGACG
R:
GAGCCCCACTGTTACAGCTTC
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]