BtaEX0033582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41509513-41512325:+
Coord C1 exon
chr6:41509513-41509676
Coord A exon
chr6:41511251-41511262
Coord C2 exon
chr6:41512187-41512325
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCCTGTTTTCTAGATG
3' ss Score
11.92
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TCGACTCCATTCGAACAACCTATATTGTGACTGCCACCTGGCCTGGCTCTCGGACTGGCTGCGCCAAAGGCCTCGGGTGGGCCTCTACACTCAGTGTATGGGGCCATCTCACCTGAGGGGCCACAATGTAGCTGAGGTTCAAAAACGAGAATTTGTCTGCAGCG
Seq A exon
ATGAGGAAGAAG
Seq C2 exon
GTCACCAGTCATTTATGGCTCCTTCTTGCAGTGTTTTGCACTGCCCAGCTGCTTGTACCTGTAGCAACAACATCGTAGATTGCCGTGGGAAAGGTCTCACTGAGATCCCCACGAATCTGCCAGAGACCATCACAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
A:
NA
C2:
PF0146213=LRRNT=WD(100=75.7),PF138551=LRR_8=PU(8.2=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGGCCATCTCACCTGAG
R:
AAACACTGCAAGAAGGAGCCA
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development