GgaEX0021164 @ galGal3
Exon Skipping
Gene
ENSGALG00000014419 | Q90XG3_CHICK
Description
NA
Coordinates
chr4:77802413-77804923:-
Coord C1 exon
chr4:77804760-77804923
Coord A exon
chr4:77804250-77804261
Coord C2 exon
chr4:77802413-77802551
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTATATTCTTGTCTCCAAGATG
3' ss Score
5.09
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TCGCCTGCACTCCAACAACCTCTACTGTGACTGCCACCTGGCCTGGCTGTCGGACTGGCTGCGGCAGCGGCCACGTGTAGGCCTCTACACTCAGTGCATGGGCCCAGCACACCTGCGGGGCCATAACGTGGCTGAGGTCCAGAAGCGGGAGTTCGTCTGCAGTG
Seq A exon
ATGAGGAAGAAG
Seq C2 exon
GTCACCAATCATTTATGGCTCCATCCTGCAGTGTCTTGCATTGTCCTGCTGCATGCACCTGTAGTAACAACATTGTGGACTGTCGTGGGAAAGGCCTTACTGAAATTCCAACAAATCTTCCAGAAACCATTACTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
A:
NO
C2:
PF0146213=LRRNT=WD(100=59.6),PF138551=LRR_8=PU(8.2=10.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACGTGGCTGAGGTCCAG
R:
GCAGGACAATGCAAGACACTG
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]