RnoEX0083452 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66955240-66958172:-
Coord C1 exon
chr14:66958009-66958172
Coord A exon
chr14:66956524-66956535
Coord C2 exon
chr14:66955240-66955378
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTGCTGCCTTCTAGATG
3' ss Score
10.47
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TCGACTCCACTCCAACAACCTATACTGCGACTGCCACCTGGCCTGGCTCTCGGACTGGCTTCGCCAAAGGCCACGGGTGGGCTTGTACACTCAGTGTATGGGCCCATCCCACCTGAGGGGCCATAATGTAGCAGAGGTTCAAAAACGAGAGTTTGTCTGCAGTG
Seq A exon
ATGAGGAAGAAG
Seq C2 exon
GTCACCAGTCATTCATGGCTCCCTCCTGCAGTGTGCTGCACTGCCCGATTGCTTGTACCTGTAGCAACAACATTGTAGACTGCCGAGGGAAAGGTCTCACTGAGATCCCCACAAATCTGCCTGAGACCATCACAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'10-13,'10-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=44.6)
A:
NO
C2:
PF0146213=LRRNT=WD(100=59.6),PF138551=LRR_8=PU(8.2=10.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCAGTGTATGGGCCCAT
R:
GGGAGCCATGAATGACTGGTG
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]