Special

BtaEX0034141 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32620401-32638947:+
Coord C1 exon
chr15:32620401-32620468
Coord A exon
chr15:32626750-32626930
Coord C2 exon
chr15:32638846-32638947
Length
181 bp
Sequences
Splice sites
3' ss Seq
CACTTTGTTTTTTCTTCCAGGGG
3' ss Score
11.22
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTATGGAAATCAGATGACTTTGGCCAGACTTGGATCATGATTCAGGAACATGTGAAGTCTGTTTCTTG
Seq A exon
GGGAATCGATCCCTACGACAAGCCAAACACCATCTACGTGGAACGGCACGAACCCTCTGGCTATTCCACAGTTTTCCGAAGCACAGACTTCTTCCAGTCTCGGGAAAACCTGGAGGTGATCCTGGAGGAAGTGAGGGACTTCCAGCTGCGGGACAAGTACATGTTTGCCACCAAGGTGGTG
Seq C2 exon
CATCTCTTCGGCAGTCCACAACCATCCTCTGTCCAGCTCTGGGTCTCCTTTGGCCGGAAGCCCATGCGAGCAGCCCAGTTTGTCACAAGACATCCTATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'21-10,'21-8,22-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATCAGATGACTTTGGCCA
R:
TCTTGTGACAAACTGGGCTGC
Band lengths:
155-336
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development