GgaEX0009394 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3512304-3514317:-
Coord C1 exon
chr24:3514250-3514317
Coord A exon
chr24:3513467-3513647
Coord C2 exon
chr24:3512304-3512405
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTCACTTATTTGCTGTCCAGGGG
3' ss Score
6.34
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTCTGGAAATCAGACGACTTTGGCCAGACGTGGATAATGATACAGGAGCACGTGAAGTCCTTTTCCTG
Seq A exon
GGGTGTTGAGCCCTATGATAAGCCCAACACAGTGTACATCGAGCGGCACGAGCCCTCCGGCACCTCCACCGTCATTCGCAGCACAGATTTCTTCCAAAGCCGAGAAAATAAAGAGGTGATCCTGGAGGATGTTGATGACTTCCAGCTCAGGGACAAATACCTGTTTGCCACCAAGGCCGTG
Seq C2 exon
CGCTTGCTGGGCAGCTTGCAGCCATCATCAGTTCAGCTCTGGGTTTCCTTCAACCGCAAGCCGATGCGGGTGGCCCAGTTCGTTACCAAGCATCCAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAAATCAGACGACTTTGG
R:
CTTAATTGGATGCTTGGTAACGA
Band lengths:
170-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]