Special

MmuEX0044410 @ mm10

Exon Skipping

Gene
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:42072245-42090012:-
Coord C1 exon
chr9:42089945-42090012
Coord A exon
chr9:42081788-42081968
Coord C2 exon
chr9:42072245-42072346
Length
181 bp
Sequences
Splice sites
3' ss Seq
CAGTTGCTTCTTCTTTCCAGGGG
3' ss Score
7.7
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CTATGGAAGTCAGATGATTTTGGCCAGACCTGGATCATGATTCAGGAACACGTGAAGTCCTTCTCTTG
Seq A exon
GGGAATCGACCCCTATGATCAGCCAAACGCTATCTACATTGAGCGACATGAACCCTTTGGGTTCTCCACAGTGCTCCGCAGTACAGACTTCTTCCAGTCCCGGGAAAACCAGGAAGTGATCCTGGAGGAAGTGAGAGACTTTCAGCTTCGCGACAAGTATATGTTTGCTACAAAGGTGGTG
Seq C2 exon
CATCTTCCGGGCAGCCAGCAGCAGTCATCTGTCCAGCTCTGGGTCTCCTTTGGCCGGAAGCCTATGAGAGCAGCCCAGTTTGTCACAAAGCATCCTATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'17-11,'17-9,19-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGAAGTCAGATGATTTTGGCC
R:
ATTAATAGGATGCTTTGTGACAAACT
Band lengths:
170-351
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types