DreEX0074521 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21664425-21714289:-
Coord C1 exon
chr15:21714161-21714289
Coord A exon
chr15:21686597-21686777
Coord C2 exon
chr15:21664425-21664526
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTTCTGTCCCCCTAGGGG
3' ss Score
13.09
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTTATGTGTCTTATGACTATGGTGCCAACTTCACCCCGGTATCAGAGAAATTTCAGCTGCCCAGGGAGCAGGAGGACAAGAAACAGGTCATCTCGCAGTTTTACCACAGTCCTGCCGACAACAAACGG
Seq A exon
GGGTGTAGAGCCGTACGACAACCCCACCACAGTGTTTGTCCAGCGCCACGAGCCCCAGGGAGACTCCAGCATCCTCACCAGCACAGACTTCTTCCAGAGCGAGCAAAACCGACGCATTATCCTGGAGAAAGTGGACAGTTTCCAGCTACGTGACAAATACATGTTTGCCACCACCACCAGG
Seq C2 exon
GCATTATTGGGGAGCCACGAGTCTCAGTCTGTCCAGCTCTGGGTTTCTTACAACCGACAGCCAATGAGAGCAGCTCAGTTTAACACCCGTCACCCAATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTTATGACTATGGTGCCA
R:
TGTGATTGGGTGACGGGTGTT
Band lengths:
226-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]