BtaEX0034787 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002658 | STAM
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001076842]
Coordinates
chr13:32428949-32445156:+
Coord C1 exon
chr13:32428949-32429141
Coord A exon
chr13:32431558-32431652
Coord C2 exon
chr13:32444523-32445156
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTTCCTCTTAGTGA
3' ss Score
7.43
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CCATTGAGTTGTCCCTGAAGGAACAAAGGCAGCAGTCAACCACCCTTTCCACTTTGTATCCAAGCACATCCAACCTCTTAACTAACCATCAACATGAAGGCCGGAAAGTTCGTGCTATATACGACTTTGAAGCTGCTGAAGATAATGAACTGACTTTTAAAGCTGGAGAAATTATTACAGTTCTTGATGACAG
Seq A exon
TGACCCCAACTGGTGGAAAGGGGAAACCCATCAAGGCATGGGGCTCTTCCCTTCAAATTTTGTGACTGCAGATCTCACTGTTGAGCCTGAAATGA
Seq C2 exon
CACAATGGTCAGCTCCGTCCCGGGAAGTACGTATCCCAGCCAGGCTTCAGTGTACAGTCCTCCCCCTGCTGCCACAGCTGCTCCCGACGTCACCATCTACCAGAACACAGGGACCAGCCTGTCCCAGGTGCCGAACTATACATTACCGTCCACACTGCCCCAGCCTGGGGGCAGCCAGCAGCCACCTCAGCCGCAGCAGCCGTACTCCCAGAAGGCTCTGCTATAGGACTGGAGTCCCCTTTGTGGCAAATACCCGCCGATCGCCAATGGCAATGTTACGAGATTCTTTAATATCTTAAGATTGGTTTACCCTCAGCTTATAGGAATCGTATCTTGGTCAACACGTTCCAATGTTCAAGAAGGGAGATCCCTCTTCAATTTGCACTGACTTTTTAGAGAGTCTCCCCTCCCCTCCCCTGTGAGGAATGAAACTACTTACAACATATAATTCCTTTCATAATATGAAAGGGTCAATGCAAGATTATCTGTCTCGTAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002658_MULTIEX1-8/13=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.394 C2=0.947
Domain overlap (PFAM):
C1:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
A:
PF0001823=SH3_1=PD(39.1=54.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAACATGAAGGCCGGAA
R:
GACTGTACACTGAAGCCTGGC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development