RnoEX0086631 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81238716-81244523:+
Coord C1 exon
chr17:81238716-81238908
Coord A exon
chr17:81240903-81240997
Coord C2 exon
chr17:81244429-81244523
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTCTGTTTGTCACAGTGA
3' ss Score
8.06
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CTATTGAGTTGTCGCTCAAGGAGCAAAGGCAGCAGGCAGCCCCCCTCTCCACGTTGTACCCAAGCACATCCAGTCTCCTCACTAACCACCAACATGAAGGCAGGAAAGTCCGCGCTGTGTATGACTTTGAGGCTGCAGAGGACAATGAGCTCACCTTTAAAGCTGGAGAGGTCATCACAGTGCTTGACGACAG
Seq A exon
TGATCCCAACTGGTGGAAAGGTGAAACACATCAAGGCATGGGGCTTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCGGAAATGA
Seq C2 exon
TTAAGACAGAGAAGAAGACGGTACAATTCAGTGACGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCGGAACCAGCCTTCATTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.667 C2=0.906
Domain overlap (PFAM):
C1:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
A:
PF0001823=SH3_1=PD(39.1=54.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTCCGCGCTGTGTATGA
R:
AATGAAGGCTGGTTCCGGTTC
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]