DreEX0075733 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31462388-31465306:+
Coord C1 exon
chr2:31462388-31462586
Coord A exon
chr2:31464723-31464817
Coord C2 exon
chr2:31465218-31465306
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTTCTCCATCACAGTGA
3' ss Score
7.19
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CTATTGAACTGTCTCTGAAGGACCAGCGGCATCAGCAGCCTCAGGTGTCTCTGTCTGGCCTCTACCCGAGCACCAGCAGCCTCCTGACCTCCCACAAGACAGACGGCAGAAAGGTCAGGGCTATCTATGACTTTGAAGCAGCCGAAGACAACGAGCTCACTTTTAAATCAGGCGAGATCATCACTATCCTGGATGACAG
Seq A exon
TGACCCTAACTGGTGGAAAGGTGAGACATATCAGGGTGTTGGGCTTTTTCCGTCAAACTTTGTGACAGCGGACCTGACAGCAGAGCCTGAGATGA
Seq C2 exon
TGAAAACAGAGAAGAAGACTGTGCAGTTTAGTGAAGAAGTCCAAGTAGAGACGATTGAACCAGAACCAGAGCCTGCCTACATTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.303 C2=0.933
Domain overlap (PFAM):
C1:
PF0280915=UIM=PD(44.4=11.9),PF0001823=SH3_1=PU(58.7=40.3)
A:
PF0001823=SH3_1=PD(39.1=54.5)
C2:
PF031279=GAT=PU(1.2=3.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAAGGTCAGGGCTATC
R:
ATGTAGGCAGGCTCTGGTTCT
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]