MmuEX6099042 @ mm10
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14128979-14134441:+
Coord C1 exon
chr2:14128979-14129171
Coord A exon
chr2:14131024-14131118
Coord C2 exon
chr2:14134353-14134441
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCTGTTTGTCACAGTGA
3' ss Score
8.48
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATCTAACCTCCTCACTAACCACCAGCACGAAGGCAGGAAAGTCCGCGCCGTGTACGATTTTGAAGCCGCTGAGGATAATGAGCTTACCTTTAAAGCTGGAGAAATCATTACAGTCCTTGATGACAG
Seq A exon
TGATCCCAACTGGTGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTTTCCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAACCAGAAATGA
Seq C2 exon
TTAAAACAGAGAAGAAGACGGTACAGTTCAATGATGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCAGCCTTTATTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'23-24,'23-19,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.327 C2=0.867
Domain overlap (PFAM):
C1:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
A:
PF0001823=SH3_1=PD(39.1=54.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGAAGGCAGGAAAGTC
R:
GGCTGGTTCTGGTTCTGGTTC
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types