BtaEX0034968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017162 | STK39
Description
Bos taurus serine threonine kinase 39 (STK39), mRNA. [Source:RefSeq mRNA;Acc:NM_001075826]
Coordinates
chr2:28118318-28161032:+
Coord C1 exon
chr2:28118318-28118347
Coord A exon
chr2:28126273-28126335
Coord C2 exon
chr2:28160965-28161032
Length
63 bp
Sequences
Splice sites
3' ss Seq
CACGGTGGCTCTCTTAACAGATG
3' ss Score
9.59
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCACGAAGAGTAAAAGAAGAAAATCCAGAG
Seq A exon
ATGGTGGTGAACGCCAGCAACATCCCCGAGCAGATACAGTCCCTTTCTGTGCAGGACTCTCAG
Seq C2 exon
GGCCTACCCAATGCTAGTGAAGACTACAGAGAAGCTTCTTGTGCCGTAAACCTCGTTTTAAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017162_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAAGAGTAAAAGAAGAAAATCCA
R:
TCTTAAAACGAGGTTTACGGCACA
Band lengths:
92-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development