HsaEX0062554 @ hg19
Exon Skipping
Gene
ENSG00000198648 | STK39
Description
serine threonine kinase 39 [Source:HGNC Symbol;Acc:17717]
Coordinates
chr2:168920010-168931521:-
Coord C1 exon
chr2:168931492-168931521
Coord A exon
chr2:168921829-168921891
Coord C2 exon
chr2:168920010-168920080
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACGGTGGCTCTCGTAACAGATT
3' ss Score
6.59
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TCACGAAGAGTAAAAGAAGAAAATCCAGAG
Seq A exon
ATTGCAGTGAGTGCCAGCACCATCCCCGAACAAATACAGTCCCTCTCTGTGCACGACTCTCAG
Seq C2 exon
GGCCCACCCAATGCTAATGAAGACTACAGAGAAGCTTCTTCTTGTGCCGTGAACCTCGTTTTGAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198648_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.845 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF122023=OSR1_C=PU(21.9=29.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAAGAGTAAAAGAAGAAAATCCA
R:
CTTAATCTCAAAACGAGGTTCACGG
Band lengths:
100-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)