RnoEX0087022 @ rn6
Exon Skipping
Gene
ENSRNOG00000024808 | Stk39
Description
serine threonine kinase 39 [Source:RGD Symbol;Acc:621643]
Coordinates
chr3:54455979-54463227:-
Coord C1 exon
chr3:54463198-54463227
Coord A exon
chr3:54457907-54457969
Coord C2 exon
chr3:54455979-54456046
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACATTGGTTCTCTTGGCAGATC
3' ss Score
9.26
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TCACGAAGAGTAAAAGAAGAGAACCCAGAG
Seq A exon
ATCTCGGTGAACGCTGGTGGCATCCCCGAGCAAATACAGTCCCTCTCCGTGCACGACTCTCAG
Seq C2 exon
GGCCAACCAAATGCTAATGAAGACTACAGAGAAGGTCCTTGTGCGGTCAACCTTGTTTTAAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024808_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.937 C2=0.478
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF122023=OSR1_C=PU(21.9=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGAAGAGTAAAAGAAGAGAACCC
R:
CTTAAAACAAGGTTGACCGCACA
Band lengths:
92-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]