MmuEX0045481 @ mm10
Exon Skipping
Gene
ENSMUSG00000027030 | Stk39
Description
serine/threonine kinase 39 [Source:MGI Symbol;Acc:MGI:1858416]
Coordinates
chr2:68307041-68314393:-
Coord C1 exon
chr2:68314364-68314393
Coord A exon
chr2:68308992-68309054
Coord C2 exon
chr2:68307041-68307108
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACACTGCTTTTCTTAACAGATC
3' ss Score
10.38
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
TCACGAAGAGTAAAAGAAGAGAACTCAGAG
Seq A exon
ATCTCGGTGAATGCTGGTGGCATCCCTGAGCAAATACAGTCTCTCTCTGTGCACGACTCTCAG
Seq C2 exon
GCCCAACCAAACGCTAATGAAGACTACAGAGAAGGTCCTTGTGCAGTCAACCTTGTTTTAAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027030_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.762 C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF122023=OSR1_C=PU(21.9=30.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAAGAGTAAAAGAAGAGAACTCA
R:
TCTTAAAACAAGGTTGACTGCACA
Band lengths:
92-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types