BtaEX0035008 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94319570-94321769:-
Coord C1 exon
chr11:94321674-94321769
Coord A exon
chr11:94320344-94320455
Coord C2 exon
chr11:94319570-94319667
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTAATATCTTCTAGCCA
3' ss Score
6.24
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCAAGGGCAAATGGATTAAAGTCATGTGTAATTGTCCTCCGCATTCTCCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTAAAAGGATGG
Seq A exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATTCTACTTCCTG
Seq C2 exon
GGGGTCCTGGTCTTCATGATCCTTGTGAGCGAGATCCAACAGATGCTCTGAGCTATATGACCATCCAGCAAAAAGAAGATATTACCCACAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.5=100)
A:
PF075289=DZF=FE(14.9=100)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAAATGGATTAAAGTCA
R:
CTGTGCACTGTGGGTAATATCT
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development