DreEX6087239 @ danRer10
Exon Skipping
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9906925-9914481:-
Coord C1 exon
chr10:9914386-9914481
Coord A exon
chr10:9912010-9912121
Coord C2 exon
chr10:9906925-9907022
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTCTTTTGTCCACAGCCT
3' ss Score
10.65
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTAGAGTTAATGGCCTAAAGTCATGCGTGATCGTCTTGCGGATACTGAGGCACATGTGCAATAGAGTCCCGGCGTGGGAGCCTCTTAAAGGATGG
Seq A exon
CCTTTGGAGTTAATATGCGAAAAGGCCATTGCCACATGTAACAGACCTCTGGGTGCAGGAGAGGCTCTGCGTCGGGTCATGGAGTGTCTGGCCTCTGGGATACTGCTTCCAG
Seq C2 exon
GTGGACCAGGATTGCATGATCCCTGTGAGAAGGAGCCAACGAACACCCTGTCGGCCATGACGGATGAGGAGGCAGAGGCTATTACATCCAATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.606
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.5=100)
A:
PF075289=DZF=FE(14.9=100)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGTTAATGGCCTAAAGTCA
R:
CTGTGCATTGGATGTAATAGCCTCT
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]