RnoEX0087167 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21875408-21877487:-
Coord C1 exon
chr3:21877392-21877487
Coord A exon
chr3:21876112-21876223
Coord C2 exon
chr3:21875408-21875505
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTAATATCTTCTAGCCA
3' ss Score
6.24
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGG
Seq A exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTG
Seq C2 exon
GTGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACCGATGCTCTAAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150_MULTIEX2-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.455
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.5=100)
A:
PF075289=DZF=FE(14.9=100)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCAAATGGATTAAAATCA
R:
TATGGGTGATATCTTCTTTTTGCTGA
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]