GgaEX0001312 @ galGal3
Exon Skipping
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9625594-9627396:-
Coord C1 exon
chr17:9627301-9627396
Coord A exon
chr17:9626376-9626487
Coord C2 exon
chr17:9625594-9625691
Length
112 bp
Sequences
Splice sites
3' ss Seq
CGTAATTTAATGTCTTCTAGCCA
3' ss Score
5.25
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCCAGGGCAAATGGACTAAAATCATGTGTAATTGTGCTTCGTATTCTGCGGGATTTGTGCAACAGAGTCCCCACATGGGCACCACTGAAAGGATGG
Seq A exon
CCACTCGAGCTTATATGTGAAAAATCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAAGCATTACGACGAGTGATGGAGTGCTTGGCATCTGGAATTCTGCTTCCCG
Seq C2 exon
GAGGCCCTGGTCTGCATGACCCCTGTGAACGGGAGCCAACAGATGCTTTGTCTGATATGACAGTTCAGCAAAAAGAAGCCATTACGCACAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.576
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.5=100)
A:
PF075289=DZF=FE(14.9=100)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGGCAAATGGACTAAAA
R:
GCACTGTGCGTAATGGCTTCT
Band lengths:
190-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]