BtaEX0036255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:127894424-127982247:+
Coord C1 exon
chr1:127894424-127894524
Coord A exon
chr1:127977960-127978036
Coord C2 exon
chr1:127982126-127982247
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTCATTCGTTGCATTTCCAGTTT
3' ss Score
7.04
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TCTTATTTATAATTTTTTAAACTATTTTATTCAGGTTGGTTTGAATTCCACAAATGCAGAACTAAGAGGATTTATAGATCAGAACCTCAGTCCAACCAAAG
Seq A exon
TTTCCAGCACCAACTCACCAACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
Seq C2 exon
ATTATAAGCACACCGCAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATACACCCCTGCTCCAGCAATGGTTACTCAGACACACATAGCAGAAGCTGCTGGCTGGGTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222-'2-10,'2-6,4-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.231 C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTTGGTTTGAATTCCACA
R:
GCTTCTGCTATGTGTGTCTGAGT
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development