MmuEX0047061 @ mm10
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96232682-96287722:+
Coord C1 exon
chr9:96232682-96232748
Coord A exon
chr9:96273839-96273942
Coord C2 exon
chr9:96287601-96287722
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTTACTTACCTGTCTTTCAGGTA
3' ss Score
12.03
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGGTTTGCCATCCACAAATGCAGAGCTGAGGGGCTTTATAGATCAGAATTTCAGTCCAACGAAAG
Seq A exon
GTAACATTTCACTTGTTGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAATAAATGTGAATGTTGGACCCCAAATG
Seq C2 exon
ATTATAAGCACACCGCAGAGAATTGCCAATTCAGGAAGTGTTCTGATTGGGAATCCATATACCCCTGCACCCGCAATGGTCACTCAGACTCACATAGCTGAGGCTGCTGGCTGGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411_MULTIEX1-10/12=6-11
Average complexity
C2*
Mappability confidence:
83%=83=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.340 C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000188750fB18120
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGCCATCCACAAATGCA
R:
AACCCAGCCAGCAGCCTC
Band lengths:
181-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types