DreEX0078399 @ danRer10
Exon Skipping
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4453925-4494680:-
Coord C1 exon
chr15:4494620-4494680
Coord A exon
chr15:4484409-4484497
Coord C2 exon
chr15:4453925-4454087
Length
89 bp
Sequences
Splice sites
3' ss Seq
GACCGTGTTTATGTTTGCAGGCA
3' ss Score
8.31
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATTGGCGCTGCAGCTCTGTGTGGAGACCTCAAGGCCTTTCTGAACCAAAACCTGTCCAAAG
Seq A exon
GCAACATTTCCCTGTTAACGCCGTCCAGCTACAGCCCAGCCAACAAGATCACACTAGGAACGGTCAATTCAAATGTGGGAGCCCAGATG
Seq C2 exon
TAAGAGATTGAAAAGGGCGGATAAGAATGGTAAAGGCCTGCGGCATTTCTCCATGAAGGTGTGCGAGAAGGTCCAGAAGAAAGGCACTACGTCGTACAACGAGGTGGCAGATGAGCTGGTAGCCGAGTTCACACACGCCAGCAGTCTGATGCCTGCAGACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835_MULTIEX1-4/10=3-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.110 C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.1=83.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACCTCAAGGCCTTTCT
R:
AACTCGGCTACCAGCTCATCT
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]