GgaEX0003530 @ galGal4
Exon Skipping
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9843071-9856864:-
Coord C1 exon
chr9:9856798-9856864
Coord A exon
chr9:9845676-9845779
Coord C2 exon
chr9:9843071-9843192
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTATTACATTATTTTTTAGGTA
3' ss Score
10.28
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTGGTGTGACTTCCACAAATGGAGACTTGAAAGGATTTATAGATCAGAACCAGAGTCCAACAAAAG
Seq A exon
GTAATATTTCAGTAATCACACTACCAGTTTCCAGTACCAACTCCCCAACAAAGATATTGCCAAAAACCTTAGGACCAATCAATGTGAATGTTGGACCCCAAATG
Seq C2 exon
ATAATAAGCACATCACAAAGACTGACCAATTCAGGGGGTGTTCTGATTGGAAGTCCGTATAACCCAGCTCCAACGATGGTGACGCAGACACACATAACAGAAGCTACTGGCTGGATTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759-'5-13,'5-11,14-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.704 C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAATGGAGACTTGAAAGGAT
R:
CTGGAATCCAGCCAGTAGC
Band lengths:
174-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]