RnoEX6036992 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104117857-104145560:+
Coord C1 exon
chr8:104117857-104118005
Coord A exon
chr8:104128475-104128578
Coord C2 exon
chr8:104145439-104145560
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTATTTATTGTCTTTTCAGGTA
3' ss Score
10.65
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTATAGAGGACAAAGACAACTTGCAGGAGCTGGCTCCCTTTCTGCTCATAGAAATTAGGGTCAGATTGAGGCGGTCAGGTTTGTGCAGCAAGCACTCTACTCTCTGGGTCATCTGGATAGCCCTAGTAGCCACATTTGAAAAGAAAACG
Seq A exon
GTAACATTTCACTTGTGGCCTTTCCAGTTTCAAGCACCAACTCACCAACAAAGATTTTACCGAAAACCTTAGGGCCAGTAAATGTGAATGTTGGACCCCAAATG
Seq C2 exon
ATTATAAGCACACCACAGAGAATTACCAATTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTCACTCAGACTCACATAGCTGAGGCTGCTGGCTGGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241-'22-27,'22-21,25-27=AN
Average complexity
A_C2
Mappability confidence:
93%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.354 C2=0.378
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGACAACTTGCAGGAGCT
R:
GCCTCAGCTATGTGAGTCTGA
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]