GgaEX0003530 @ galGal3
Exon Skipping
Gene
ENSGALG00000002753 | F1N8A4_CHICK
Description
NA
Coordinates
chr9:11441963-11455771:-
Coord C1 exon
chr9:11455690-11455771
Coord A exon
chr9:11444568-11444671
Coord C2 exon
chr9:11441963-11442084
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTATTACATTATTTTTTAGGTA
3' ss Score
10.28
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AAATGTTTTGTTCAGGTTGGTGTGACTTCCACAAATGGAGACTTGAAAGGATTTATAGATCAGAACCAGAGTCCAACAAAAG
Seq A exon
GTAATATTTCAGTAATCACACTACCAGTTTCCAGTACCAACTCCCCAACAAAGATATTGCCAAAAACCTTAGGACCAATCAATGTGAATGTTGGACCCCAAATG
Seq C2 exon
ATAATAAGCACATCACAAAGACTGACCAATTCAGGGGGTGTTCTGATTGGAAGTCCGTATAACCCAGCTCCAACGATGGTGACGCAGACACACATAACAGAAGCTACTGGCTGGATTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002753-'3-7,'3-5,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.571 C2=0.585
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTTTTGTTCAGGTTGGTGTGAC
R:
CTGGAATCCAGCCAGTAGC
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]